Copy custom extension flags in a call to SSL_set_SSL_CTX()

The function SSL_set_SSL_CTX() can be used to swap the SSL_CTX used for
a connection as part of an SNI callback. One result of this is that the
s->cert structure is replaced. However this structure contains information
about any custom extensions that have been loaded. In particular flags are
set indicating whether a particular extension has been received in the
ClientHello. By replacing the s->cert structure we lose the custom
extension flag values, and it appears as if a client has not sent those
extensions.

SSL_set_SSL_CTX() should copy any flags for custom extensions that appear
in both the old and the new cert structure.

Fixes #2180

Reviewed-by: Rich Salz <rsalz@openssl.org>
(Merged from https://github.com/openssl/openssl/pull/3425)